SeqPeek¶
SeqPeek is a special-purpose visualization designed to show mutations along a linear representation of the protein-product from a gene. Only one protein/gene may be viewed at any one time, but the user may select multiple cohorts in order to compare the mutation patterns observed in different cohorts.
Creating a SeqPeek Visualization¶
You can create a new SeqPeek visualization from the User Dashboard. Select the “SeqPeek” option from the “+ Create” menu. This will automatically take you to a SeqPeek page with no pre-selected settings. To make changes, open the Settings panel.
In the Settings panel, there will be options to select in order to make a new plot.
- Gene selection: this is an autocompleting dropdown for valid gene symbols
- Cohorts: here you can select one or more cohorts for the visualization
To add a cohort, select the “+ Cohort” option underneath the currently selected list of cohorts. This will take you to the cohorts listing panel where you can select a cohort from the list, or use the autocomplete textbox to search in their list of cohorts. When all the settings have been set, you can click “Update Plot” to regenerate the plot with the new settings.
Saving a SeqPeek Visualization¶
To save changes to the visualization, click “Save Visualization” button. This will prompt you to name your SeqPeek visualization and save. You will be notified after it saves correctly.
Deleting a SeqPeek Visualization¶
- From User Dashboard Select the SeqPeek visualizations that you wish to delete using the checkboxes next to the visualization. When one or more are selected, the delete button will be active and you can then proceed to deleting them.
- From SeqPeek Visualization When viewing a SeqPeek visualization that you created, you may delete it using the top right menu option.